Evidence of natural selection in the mitochondrial-derived peptides humanin and SHLP6.
Gruschus. James M JM; Morris. Daniel L DL; Tjandra. Nico N
Key Findings
- Humanin and SHLP6 show strong synonymous codon bias and are well‑conserved across vertebrates, indicating functional importance.
- Other SHLP peptides (1,2,3,5) lack codon bias and are poorly conserved, suggesting they may be less biologically relevant.
- MOTS‑c and SHLP4 lack overall bias but have conserved N‑terminal regions, so they might still be important; a new peptide SHLP2b also shows a conserved region.
Practical Outcomes
- For biohackers, the main takeaway is that humanin appears to be a biologically significant peptide, making it a higher‑priority target for further reading or supplementation experiments. The other SHLPs are likely lower priority, and the paper doesn’t provide specific dosing or protocol guidance.
Summary
The study looked at how the genetic code for several tiny proteins made in mitochondria has changed over evolution. It found that humanin and one other peptide, SHLP6, are highly conserved, meaning they probably have important roles in the body, while many of the other related peptides don’t show this pattern. This suggests humanin is a real, functional molecule worth paying attention to, but the paper doesn’t give any dosing or usage tips.
Abstract
Mitochondrial-derived peptides are encoded by mitochondrial DNA but have biological activity outside mitochondria. Eight of these are encoded by sequences within the mitochondrial 12S and 16S ribosomal genes: humanin, MOTS-c, and the six SHLP peptides, SHLP1-SHLP6. These peptides have various effects in cell culture and animal models, affecting neuroprotection, insulin sensitivity, and apoptosis, and some are secreted, potentially having extracellular signaling roles. However, except for humanin, their importance in normal cell function is unknown. To gauge their importance, their coding sequences in vertebrates have been analyzed for synonymous codon bias. Because they lie in RNA genes, such bias should only occur if their amino acids have been conserved to maintain biological function. Humanin and SHLP6 show strong synonymous codon bias and sequence conservation. In contrast, SHLP1, SHLP2, SHLP3, and SHLP5 show no significant bias and are poorly conserved. MOTS-c and SHLP4 also lack significant bias, but contain highly conserved N-terminal regions, and their biological importance cannot be ruled out. An additional potential mitochondrial-derived peptide sequence was discovered preceding SHLP2, named SHLP2b, which also contains a highly conserved N-terminal region with synonymous codon bias.
Study Information
pubmed
2023
2023-08-29T00:00:00.000Z
10.1038/s41598-023-41053-0
10
34