Mots-C
Mitochondrial open reading frame of the 12S rRNA-c, MT-RNR1, Mitochondrial-derived peptide MOTS-c
Extension of Mitogenome Enrichment Based on Single Long-Range PCR: mtDNAs and Putative Mitochondrial-Derived Peptides of Five Rodent Hibernators.
Emser. Sarah V SV; Schaschl. Helmut H; Millesi. Eva E; Steinborn. Ralf R
Key Findings
- A single long‑range PCR with back‑to‑back primers works across diverse vertebrates, enabling easy mtDNA sequencing.
- Four hibernating rodent species’ complete mitogenomes were newly sequenced.
- MOTS‑c, SHLP4 and SHLP6 show high sequence conservation among vertebrates, hinting at important biological roles.
- No clear link was found between specific OXPHOS gene variants and cold‑adaptation strategies.
Practical Outcomes
- The main takeaway for biohackers is that MOTS‑c is highly conserved, supporting its relevance, but the paper doesn’t provide new dosage or supplementation protocols. The PCR method could help future research generate more mitochondrial data, which might eventually inform peptide‑based interventions, but there’s no direct actionable advice right now.
Summary
The study introduces a new PCR technique that can pull out whole mitochondrial DNA from many vertebrates, and uses it to sequence the mtDNA of several hibernating rodents. It looks at the natural mitochondrial peptides MOTS‑c, SHLP4 and SHLP6 and finds they are very similar across species, but it doesn’t test any health effects or give dosing advice. So while it confirms that these peptides are evolutionarily conserved, it offers little immediate guidance for supplementing or using them in humans.
Abstract
Enriching mitochondrial DNA (mtDNA) for sequencing entire mitochondrial genomes (mitogenomes) can be achieved by single long-range PCR. This avoids interference from the omnipresent nuclear mtDNA sequences (NUMTs). The approach is currently restricted to the use of samples collected from humans and ray-finned fishes. Here, we extended the use of single long-range PCR by introducing back-to-back oligonucleotides that target a sequence of extraordinary homology across vertebrates. The assay was applied to five hibernating rodents, namely alpine marmot, Arctic and European ground squirrels, and common and garden dormice, four of which have not been fully sequenced before. Analysis of the novel mitogenomes focussed on the prediction of mitochondrial-derived peptides (MDPs) providing another level of information encoded by mtDNA. The comparison of MOTS-c, SHLP4 and SHLP6 sequences across vertebrate species identified segments of high homology that argue for future experimentation. In addition, we evaluated four candidate polymorphisms replacing an amino acid in mitochondrially encoded subunits of the oxidative phosphorylation (OXPHOS) system that were reported in relation to cold-adaptation. No obvious pattern was found for the diverse sets of mammalian species that either apply daily or multiday torpor or otherwise cope with cold. In summary, our single long-range PCR assay applying a pair of back-to-back primers that target a consensus sequence motif of Vertebrata has potential to amplify (intact) mitochondrial rings present in templates from a taxonomically diverse range of vertebrates. It could be promising for studying novel mitogenomes, mitotypes of a population and mitochondrial heteroplasmy in a sensitive, straightforward and flexible manner.
Study Information
pubmed
2021
2021-12-13T00:00:00.000Z
10.3389/fgene.2021.685806
15
146