Identification and validation of palmitoylation-related signature genes based on machine learning for prostate cancer.
Wo. Qijun Q; Shou. Jiafeng J; Shi. Jun J; Shi. Lei L; Yang. YunKai Y; Wang. Yifan Y; Xie. Liping L
Key Findings
- Six palmitoylation‑related genes were differentially expressed in prostate cancer tissue.
- Three core genes (TRPM4, LAMB3, APOE) formed a diagnostic model with high accuracy (AUC 0.929).
- LAMB3 overexpression reduced cancer cell growth and spread, while its knockdown increased these behaviors.
Practical Outcomes
- For biohackers, the research offers no direct, actionable information about using palmitoyl‑dipeptide‑6 or related compounds to improve longevity, metabolism, or performance. It is primarily a cancer‑biology study focused on diagnostic biomarkers and potential drug targets, not a protocol or dosage guideline for self‑directed health optimization.
Summary
The study looks at genes linked to a chemical modification called palmitoylation in prostate cancer and finds a few that could help diagnose or treat the disease, but it does not test the peptide palmitoyl‑dipeptide‑6 or give any advice on using it for health or performance.
Abstract
Prostate cancer (PCa) remains a leading cause of cancer-related mortality in men, with challenges in diagnosis and treatment due to tumor heterogeneity. This study identifies palmitoylation-related signature genes as potential diagnostic and therapeutic targets. Integrating GEO datasets, six differentially expressed genes (DEGs) linked to palmitoylation were identified. Machine learning algorithms (LASSO, RF, SVM) selected three core genes: TRPM4, LAMB3, and APOE. A diagnostic model based on these genes achieved an AUC of 0.929, demonstrating robust accuracy in distinguishing PCa from normal tissues. Functional analysis revealed roles in lipid metabolism and immune modulation, with ssGSEA highlighting correlations between key genes and immune cell infiltration. Experimental validation showed that LAMB3 overexpression suppressed PCa cell proliferation, migration, and invasion, while knockdown enhanced these processes. Molecular docking identified diethylstilbestrol as a potential therapeutic agent targeting LAMB3 and APOE. These findings emphasize the clinical relevance of palmitoylation-related genes in PCa diagnosis and therapy, offering novel biomarkers and insights for personalized treatment strategies.
Study Information
pubmed
2025
2025-12-04T00:00:00.000Z
10.1371/journal.pone.0338407
32